There are a few articles online –– DBSCAN Python Example: The Optimal Value For Epsilon (EPS) and CoronaVirus Pandemic and Google Mobility Trend EDA –– which basically use the same approach but fail to mention the crucial choice of the value of K or n_neighbors as 2xN-1 when performing the above procedure. min_samples hyperparameter
There is the DBSCAN package available which implements Theoretically-Efficient and Practical Parallel DBSCAN. It's lightening quick compared to scikit-learn and doesn't suffer from the memory issue.
Also, per the DBSCAN docs, it's designed to return -1 for 'noisy' sample that aren't in any 'high-density' cluster. It's possible that your word-vectors are so evenly distributed there are no 'high-density' clusters. (From what data are you training the word-vectors, & how large is the set of word-vectors?
DBSCAN does not "initialize the centers", because there are no centers in DBSCAN. Pretty much the only clustering algorithm where you can assign new points to the old clusters is k-means (and its many variations). Because it performs a "1NN classification" using the previous iterations cluster centers, then updates the centers.
3 sklearn.cluster.DBSCAN gives -1 for noise, which is an outlier, all the other values other than -1 is the cluster number or cluster group. To see the total number of clusters you can use the command DBSCAN.labels_ What is eps or Epsilon value used in DBScan? Epsilon is the local radius for expanding clusters.
Closed 6 years ago. Is there anyway in sklearn to allow for higher dimensional clustering by the DBSCAN algorithm? In my case I want to cluster on 3 and 4 dimensional data. I checked some of the source code and see the DBSCAN class calls the check_array function from the sklearn utils package which includes an argument allow_nd.
Reading around, I find it is possible to pass a precomputed distance matrix into SKLearn DBSCAN. Unfortunately, I don't know how to pass it for calculation. Say I have a 1D array with 100 elements,...
From the paper dbscan: Fast Density-Based Clustering with R (page 11) To find a suitable value for eps, we can plot the points’ kNN distances (i.e., the distance of each point to its k-th nearest neighbor) in decreasing order and look for a knee in the plot. The idea behind this heuristic is that points located inside of clusters will have a small k-nearest neighbor distance, because they ...
The official DBSCAN algorithm places any point which is a core point in the cluster in which it is part of the core but places points which are only reachable from two clusters in the first cluster they are found to be reachable from.
1 I'm puzzeled about how does cosine metric works in sklearn's clustering algorithoms. For example, DBSCAN has a parameter eps and it specified maximum distance when clustering. However, bigger cosine similarity means two vectors are closer, which is just the opposite to our distance concept.
